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cvasl

This library allows exploration and analyses of neuroimaging datsets. The software was developed to allow implementation of multiple large data harmonization and machine learning algorithms over neuroradiology datasets. The core algorithms are implemented in Python.

Jupyter Notebook
Python
Dockerfile
+ 2

cwltool

The reference implementation of the Common Workflow Language standards

CommonWL
CWL
SciWorkflows

Python
Common Workflow Language
Shell
+ 4

Data Processing (What Works When for Whom)

Data processing scripts for the project What Works When for Whom

Jupyter Notebook
Python
Shell

dCacheFS

Python file-system interface for dCache storages.

Data
Inter-operability & linked data
Optimized data handling
+ 1

Python
Jupyter Notebook

DeepRank

Deep learning framework for data mining protein-protein interactions using CNN

Big data
Machine learning
Optimized data handling

Python
R
C
+ 2

DeepRank2

DeepRank2 is an open-source deep learning framework for data mining of protein-protein interfaces or single-residue missense variants. This package is an improved and unified version of three previously developed packages: DeepRank, DeepRank-GNN and DeepRank-Mut.

Cancer vaccine
Convolutional Neural Network
Deep Learning Framework
+ 5

Python
Jupyter Notebook
TeX
+ 1

DeepRank GNN

DeepRank-GNN is the graph neural network of our DeepRank package. DeepRank GNN allows to train graph neural networks to classify protein-protein interface

Python

Democracy Scraping Tool

A scraping tool to scrape various sources of country reports.

scraping

Python

Democracy text classification

LLM transfer learning to classify country reports into democracy dimensions.

fine-tuning
llm
transfer learning

Jupyter Notebook
Python

Democracy Topic Modelling

Various Jupyter notebooks for topic modelling on democracy texts including BERT and dictionary, keyword-based approaches.

BERT
dictionary
Topic Modelling

Jupyter Notebook
Python

dhdt

A photohypsometric Python library to estimate glacier elevation change via optical remote sensing imagery

geospatial
Glacier
image
+ 2

Python
TeX

DIANNA

Deep Insight And Neural Network Analysis, DIANNA is the only Explainable AI, XAI library for scientists supporting Open Neural Network Exchange, ONNX - the de facto standard models format.

Explainable AI
Image processing
Machine learning
+ 2

Jupyter Notebook
Python
TeX