Allelic Variation Explorer

If you are studying how single nucleotide polymorphisms are clustered in genomic samples, then the Allelic Variation Explorer can help you visualize them.

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214 commits | Last update: March 23, 2018

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What Allelic Variation Explorer can do for you

  • It provides a genome browser with a track where the samples which have the same SNPs are clustered together, it can be used by bioinformations to explain why certain samples have the same phenotype
  • It takes variants of a large number of samples and for the requested genomic range it performs clustering and visualizes the clusters
  • the clustering is done quick and on the fly
  • the reference genome, gene and feature tracks are rendered from static files, so you don't need any application server just a static web server
Tags
  • Visualization
Programming Language
  • Python
  • JavaScript
License
  • Apache-2.0
Source code

Participating organizations

Projects with Allelic Variation Explorer

Contributors

  • Stefan Verhoeven
    Netherlands eScience Center
  • Mateusz Kuzak
    Netherlands eScience Center
Contact person
Stefan Verhoeven
Netherlands eScience Center
Mail Stefan